rs220733570 SNP Detail

Summary

• ID
  rs220733570
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:56809186 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAACAAAGC AGAATTTGAA
  GTTGAATATT CTTTCTTTAC AGTGAGTTGA ATGACTTTTG TAAACCAGGG TAGATGCTGT
  CAAACGGAAA GACAGTTTTC TCAGTGAGGC TGCCTGGGCT CCCAACCATC ACAGCTTCCT
  CAGAGAGCTG GGCTGAGTGT TCTGTTCATC ACAGTCACTT TCAGGACTGA ACACACTAAG
  S
  AATCAGCAGC AGCCATGCTG CCGCACTGCA CAGCATCAAA GAATAAGTCT TTGGTTCCTG
  TGTGAAGGAA CTAAAGGTTT ATGAGTGCCC CTTCTTCTAC CACTCAGGAT TTCAGTCTGG
  AAAAAAAAAA AAAAATCAGA CTGGGAAATG TCACCCTTAC TCCATGGAAC CTGTTCTCAA
  TCAAACACCT TAAGTTTCTA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325859378	CHEV_19_56895244	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220733570					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:56809186 () rs orientation: forward

Symbol	Name	Function Class
1700010L13Rik	RIKEN cDNA 1700010L13 gene	1152 bp upstream
Ccdc186	coiled-coil domain containing 186	Intron
Cpgi11092	CpG island 11092	883 bp proximal
Rr406045	regulatory region 406045	1363 bp upstream
Rr550140	regulatory region 550140	662 bp proximal
Rr550141	regulatory region 550141	1163 bp proximal
Rr550142	regulatory region 550142	1426 bp proximal
Tssr157215	transcription start site region 157215	1174 bp upstream
Tssr159886	transcription start site region 159886	1326 bp downstream
Tssr159887	transcription start site region 159887	1407 bp downstream