rs220733780 SNP Detail

Summary

• ID
  rs220733780
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122524641 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATGGCTGAGC GCTCTCTCCA GCCCAGATAT ACTCTAAGTA
  CCCAGCCCTC CTTTCACCTC CCACCCCCAT TATTAAGCCT TTCCCCATCA AATTCTGAGC
  R
  TAGAGGGATC GGATGATAAC ACAGAAAGTA GAGCGGTTTC TTTTTAAAAC ATTACAGGAA
  GTTTGAGCCG AAGCACCAAG ACAGACCATC TCGACCTAG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320914174	CHEV_3_122433910	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220733780					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122524641 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13771	CpG island 13771	57 bp distal
Pde5a	phosphodiesterase 5A, cGMP-specific	within coordinates
Rr584394	regulatory region 584394	1412 bp distal
Rr584395	regulatory region 584395	within coordinates
Rr584396	regulatory region 584396	509 bp distal
Tssr31509	transcription start site region 31509	1997 bp downstream
Tssr31510	transcription start site region 31510	1977 bp downstream
Tssr31511	transcription start site region 31511	1858 bp downstream
Tssr31512	transcription start site region 31512	1810 bp downstream
Tssr31513	transcription start site region 31513	1759 bp downstream
Tssr31514	transcription start site region 31514	1257 bp downstream
Tssr31515	transcription start site region 31515	1123 bp downstream
Tssr31516	transcription start site region 31516	1098 bp downstream
Tssr31517	transcription start site region 31517	1063 bp downstream
Tssr31518	transcription start site region 31518	935 bp downstream
Tssr31519	transcription start site region 31519	873 bp downstream
Tssr31520	transcription start site region 31520	839 bp downstream
Tssr31521	transcription start site region 31521	753 bp downstream
Tssr31522	transcription start site region 31522	731 bp downstream