rs220736811 SNP Detail

Summary

• ID
  rs220736811
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:98306793 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCAAGGGA AGTAAGGAGG
  GGGTACACAA AAACTAGGAC CAAAAGCAAC CTTTCCCCTT CCACACCTCC TCTTTCTAGG
  CTAGGAGGGG TTGGGTGAAA AGAGCAAATG GAAGGTCTGA ACTGAAAGTG GCCAACAGCA
  GGGACAAACC TGGCTCTGCA CCATCTTCGC CCCCGCCCCT CCCGCCCCCT GCCCCGCCCC
  G
  CCCCGATCCC CGCTCCGCCC TCTCACCCTG GGAGGAGGGA TCGCTACAAT GGACCCTCCT
  GCGGGCTTTG TGCACTCTTG GAATCCAGCT GTCGCCGCCC CGCGGAGCCC CGTGTCCCCC
  GAGGGCGCCC ATTTCCGGGC CGTCCATCAC CCGGAGTGCA TTGGCAGCAA CCGTCCGGGC
  CGAACCCACA GCCGCTCCCG                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378625875	MGP_WTSI_9_98325159	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220736811					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378625875	MGP_WTSI_9_98325159	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:98306793 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22178	CpG island 22178	within coordinates
D9Mit33	DNA segment, Chr 9, Massachusetts Institute of Technology 33	1146 bp distal
Rbp1	retinol binding protein 1, cellular	within coordinates
Rr685256	regulatory region 685256	1769 bp distal
Rr685257	regulatory region 685257	1611 bp distal
Tssr2984	transcription start site region 2984	343 bp upstream
Tssr86646	transcription start site region 86646	39 bp upstream
Tssr86647	transcription start site region 86647	122 bp upstream
Tssr86648	transcription start site region 86648	182 bp upstream
Tssr86649	transcription start site region 86649	219 bp upstream
Tssr86650	transcription start site region 86650	566 bp upstream
Tssr86651	transcription start site region 86651	748 bp upstream