rs220748769 SNP Detail

Summary

• ID
  rs220748769
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:37134540 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TACATCGAT GGAGTAGGTG GGTGTCATAG
  CAACCGAAGA GGAAAAACTG GGGGGCTCCC CAACACAGCT Ctgtgtgtgt gtgtgtgtgt
  gtgtatgaga gagagagaga gagagagaga gagagagaga gagagagaga gagagagaga
  K
  aTTTAGAGCT CTCAAACAAA TACAAGCCTC TTTCAAATCA ACTTGCCCTA GAAGGTTTCT
  ATGCAGACTG TCAGCCATTC AGACCATACT GTGACTTAGT AAATAGATGC TTTTCAATGG
  TGTTATGACA TGAAAGCACA GGtcagcctc                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324925274	CHEV_15_37064051	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220748769					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:37134540 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7042	CpG island 7042	1064 bp proximal
Gm34820	predicted gene, 34820	1350 bp upstream
Gm41301	predicted gene, 41301	within coordinates
Gm41302	predicted gene, 41302	within coordinates
Gm63629	predicted gene, 63629	within coordinates
Rr714	regulatory region 714	67 bp proximal
Rr501169	regulatory region 501169	within coordinates
Rr501170	regulatory region 501170	860 bp proximal
Rr501171	regulatory region 501171	1453 bp proximal
Rr501172	regulatory region 501172	1580 bp proximal
Tssr131093	transcription start site region 131093	1605 bp upstream
Tssr134082	transcription start site region 134082	1455 bp downstream