rs220749396 SNP Detail

Summary

• ID
  rs220749396
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:108886329 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCAGGGTT TGGCTGCATT
  GGCAGTGAGG CAGGTGGCTG GGGGTGACAC CAGGTGACAA GGGGACTCAG TGGCAGGGGG
  TCACACCAGG CAGAACACCA TACACTCTCC ATCAGCTGTC TGTCTGGATG TCACTGTCCT
  TCCCGGGGCT GTATAGAGGG CCACATGTGT TCACTATTCA GGCTCCACTG GGGGAATTTT
  Y
  CTACCTTTGC TGGCTTGGCT CCTGCTCCCA GGCCAGGGAC CTCGGTCTGT CTACTACACA
  CTCTGGTTTC TCCCTGCACT GTCTTTTTAC TGTTAGCCAA ACATTTTGCC TGTTTTCTGT
  CTCCAGATGT GTGATAATTG GTGTGAGGTT GAAATCCCTG GTTCCTGGAG GACAGACAAC
  CTGACCTCCG ACTGTCAGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378877911	MGP_WTSI_9_108959775	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220749396					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378877911	MGP_WTSI_9_108959775	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:108886329 () rs orientation: forward

Symbol	Name	Function Class
Gm53191	predicted gene, 53191	672 bp downstream
Rr686955	regulatory region 686955	1639 bp distal
Rr686956	regulatory region 686956	325 bp proximal
Rr686957	regulatory region 686957	1980 bp proximal
Shisa5	shisa family member 5	within coordinates
Trex1	three prime repair exonuclease 1	671 bp downstream
Tssr87212	transcription start site region 87212	1628 bp downstream
Tssr87213	transcription start site region 87213	1270 bp downstream
Tssr87214	transcription start site region 87214	1198 bp downstream
Tssr87215	transcription start site region 87215	967 bp downstream
Tssr87216	transcription start site region 87216	914 bp downstream
Tssr87217	transcription start site region 87217	841 bp downstream
Tssr87218	transcription start site region 87218	541 bp downstream
Tssr87219	transcription start site region 87219	308 bp downstream
Tssr87220	transcription start site region 87220	220 bp downstream
Tssr87221	transcription start site region 87221	1 bp downstream
Tssr87222	transcription start site region 87222	34 bp upstream
Tssr91571	transcription start site region 91571	454 bp downstream
Tssr91572	transcription start site region 91572	975 bp downstream
Tssr91573	transcription start site region 91573	1132 bp downstream
Tssr91574	transcription start site region 91574	1362 bp downstream
Tssr91575	transcription start site region 91575	1413 bp downstream
Tssr91576	transcription start site region 91576	1498 bp downstream
Tssr91577	transcription start site region 91577	1955 bp downstream