rs220756349 SNP Detail

Summary

• ID
  rs220756349
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:72536713 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTTTATCT GCCCCAGACC
  CTGCACTTAC CTCCCAGCAT GTTCTCTTCT GGGTAGATCT CCCTGAGACC CTGAACGAAC
  TTCACCTGGA CCACAACAAA ATCCAGGCTA TTGAGTTGGA GGACCTACTT CGATACTCCA
  AGCTGTACAG GTGGGGTTGA GGCAGCCCTT GGGGGATGCA GGGATCCATT AGCAAATGGG
  K
  CAGGTTATAG GGTGGCACCC AGGTCCCTGT GCTCTATCCC AGAGTCCTCC TCTCCCCCAG
  CCTCTGACGA CCTCTAATTC ATTTACCTTC AGGTTGGGCT TAGGTCACAA TCAGATTCGG
  ATGATTGAGA ATGGGAGCCT GAGTTTTCTG CCTACCCTGA GGGAACTTCA CTTGGACAAC
  AACAAGCTGT CCCGGGTGCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss403771562	MGP_WTSI_X_70738446	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220756349					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403771562	MGP_WTSI_X_70738446	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:72536713 () rs orientation: forward

Symbol	Name	Function Class
Bgn	biglycan	within coordinates
Rr691890	regulatory region 691890	562 bp proximal
Rr691891	regulatory region 691891	670 bp proximal
Tssr5633	transcription start site region 5633	159 bp upstream
Tssr5634	transcription start site region 5634	1590 bp downstream
Tssr5635	transcription start site region 5635	1945 bp downstream
Tssr161214	transcription start site region 161214	1742 bp downstream
Tssr161215	transcription start site region 161215	1103 bp downstream
Tssr161216	transcription start site region 161216	1085 bp downstream
Tssr161217	transcription start site region 161217	1046 bp downstream
Tssr161218	transcription start site region 161218	1033 bp downstream
Tssr161219	transcription start site region 161219	972 bp downstream
Tssr161220	transcription start site region 161220	369 bp downstream
Tssr161221	transcription start site region 161221	310 bp downstream
Tssr161222	transcription start site region 161222	295 bp downstream
Tssr161223	transcription start site region 161223	125 bp downstream
Tssr161224	transcription start site region 161224	71 bp downstream
Tssr161225	transcription start site region 161225	87 bp upstream
Tssr161226	transcription start site region 161226	129 bp upstream
Tssr161227	transcription start site region 161227	173 bp upstream
Tssr161228	transcription start site region 161228	1491 bp upstream
Tssr161229	transcription start site region 161229	1524 bp upstream
Tssr161230	transcription start site region 161230	1548 bp upstream
Tssr161231	transcription start site region 161231	1565 bp upstream
Tssr161232	transcription start site region 161232	1616 bp upstream
Tssr161233	transcription start site region 161233	1688 bp upstream
Tssr161234	transcription start site region 161234	1708 bp upstream
Tssr161235	transcription start site region 161235	1773 bp upstream
Tssr161236	transcription start site region 161236	1816 bp upstream
Tssr161237	transcription start site region 161237	1870 bp upstream
Tssr161238	transcription start site region 161238	1906 bp upstream
Tssr161239	transcription start site region 161239	1955 bp upstream
Tssr161240	transcription start site region 161240	1969 bp upstream
Tssr163544	transcription start site region 163544	1671 bp upstream
Tssr163545	transcription start site region 163545	1044 bp upstream
Tssr163546	transcription start site region 163546	980 bp upstream
Tssr163547	transcription start site region 163547	1511 bp downstream
Tssr163548	transcription start site region 163548	1617 bp downstream
Tssr163549	transcription start site region 163549	1694 bp downstream
Tssr163550	transcription start site region 163550	1749 bp downstream
Tssr163551	transcription start site region 163551	1834 bp downstream
Tssr163552	transcription start site region 163552	1960 bp downstream