rs220758786 SNP Detail

Summary

• ID
  rs220758786
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:85698289 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCTGATGG GGGAGGGAGC
  AGCGAGAGGA GGAGGGTGAT CGAGGAAAGG CAGACCGGGA AGGAGGAAGG GGCCAGAACC
  TAGCAAGGTG GAAGGAGGGA CAAAGGAGGG AGTAAGGGTG AGAAAGAGAT TGAGAGAGAA
  AAAGTATTTG GGCAGAAAAC AAGAAAATTC TCTTGGCCTC ATTTAAAGCC ACAGCAACTC
  Y
  GGTTCTGTGT GGTATTTCAC AACCAATCGG GGTTGGCTAA CCTCGGCTTA CCTCATCTCC
  TGAAGGGGTG TTTTGGTGTG TTTTTAAAGT CTCTCTCTGC CTCCTTCCCC TTGCTGTTCT
  TGAGCGGGAT ATGAAGTTCT TGCTTCATTT TGCCGGCCAG TGCGCTCTGG CCTTGTAGAC
  CTGGTAACTT CACTGGTCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397172078	MGP_WTSI_16_85901646	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220758786					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397172078	MGP_WTSI_16_85901646	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:85698289 () rs orientation: forward

Symbol	Name	Function Class
Adamts5	ADAM metallopeptidase with thrombospondin type 1 motif 5	276 bp upstream
Cpgi8391	CpG island 8391	929 bp distal
Cpgi8392	CpG island 8392	91 bp distal
Gm46558	predicted gene, 46558	within coordinates
Rr319329	regulatory region 319329	1889 bp distal
Rr325517	regulatory region 325517	within coordinates
Tssr141914	transcription start site region 141914	1149 bp upstream
Tssr141915	transcription start site region 141915	1121 bp upstream
Tssr141916	transcription start site region 141916	1092 bp upstream
Tssr141917	transcription start site region 141917	768 bp upstream
Tssr141918	transcription start site region 141918	710 bp upstream
Tssr141919	transcription start site region 141919	656 bp upstream
Tssr141920	transcription start site region 141920	330 bp upstream
Tssr141921	transcription start site region 141921	268 bp upstream
Tssr141922	transcription start site region 141922	39 bp upstream
Tssr141923	transcription start site region 141923	391 bp downstream