rs220770934 SNP Detail

Summary

• ID
  rs220770934
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:141934478 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAGCAGCTC AGACTCTGAC
  CCAGGCAACC AGCATCTCCT GACTGAAGTC CCTGGCTCAT GGCTTTCTCT CCCAAGCAGG
  TAAAGTAACT AACTCCTACC TACCAGATAC CCTTAGGTCT GATGCCACGG CCAAGCCTAC
  AGCACAGACT CTTAAGTCCC ATCTATATCC TTTGCCCTGA AGCAGAGCTC AAGGGAGGGT
  R
  AGAGCCACGC CTCTCCTGCT GCACCTGTTC AGGTAGAAGG AGAAGATGTT CTTGTCCACC
  AGCTTCTGTT GCATCAGGTT GTCAAAGACC GGAAGCACGT TGTTAACAGA GATATGAGGG
  TAGCCCATGC CCAAGATGCC ATCAAACTTG GCTGCAACAA ATACGATTCC AGGCTGCTTG
  GTGGCTTCTC CAAAGATCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373449980	MGP_WTSI_7_149566646	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220770934					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373449980	MGP_WTSI_7_149566646	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:141934478 () rs orientation: forward

Symbol	Name	Function Class
Ctsd	cathepsin D	Intron
Gm49369	predicted gene, 49369	Intron
Rr368483	regulatory region 368483	434 bp upstream
Rr658151	regulatory region 658151	514 bp proximal
Tssr70137	transcription start site region 70137	42 bp upstream
Tssr70138	transcription start site region 70138	90 bp upstream
Tssr70139	transcription start site region 70139	109 bp upstream
Tssr70140	transcription start site region 70140	139 bp upstream
Tssr70141	transcription start site region 70141	152 bp upstream
Tssr70142	transcription start site region 70142	188 bp upstream
Tssr70143	transcription start site region 70143	1883 bp upstream
Tssr75774	transcription start site region 75774	49 bp downstream
Tssr75775	transcription start site region 75775	70 bp downstream
Tssr75776	transcription start site region 75776	76 bp downstream
Tssr75777	transcription start site region 75777	109 bp downstream
Tssr75778	transcription start site region 75778	149 bp downstream
Tssr75779	transcription start site region 75779	185 bp downstream
Tssr75780	transcription start site region 75780	195 bp downstream
Tssr75781	transcription start site region 75781	217 bp downstream
Tssr75782	transcription start site region 75782	241 bp downstream
Tssr75783	transcription start site region 75783	1875 bp downstream