rs220775352 SNP Detail

Summary

• ID
  rs220775352
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5821864 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAGGGGTT CAGGAAGTGA
  GCGTGACAAT AGGGCCTATC TAAACCTGGG GGGGCAGGGG TGGAAAGAGA TGGGGAGATA
  GAAAAGAAAG GCTACTAGTG GCAGGCAGTA TGATTGGAAA GTAATAGTAG TGAGGAGAAT
  GGTTATTGCT CTCATTTTTT AAGATATATT TATTTTATGT ATATGACTAC ACTGTAGCTG
  K
  CTTCAGACAC AACAGAAGAG GGCATCGGAT TCCATTACAG ATGGTTGTGA GCTGCCATGT
  GGTTGCTGGG AATTGAACAC AGGACCTCTG GAAAAGCAGT CAGTGCTCTT AACCCCTGGT
  CTCTCCAAAC TCCAATGGTT ATCTCTTAAG CCAAACGCTC CTTCAACAGG CAATGGGCAG
  ATTTGGGGTT CAGCGAGGAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325717452	CHEV_19_5771836	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220775352					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5821864 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10479	CpG island 10479	264 bp distal
Gm59602	predicted gene, 59602	within coordinates
Gm59603	predicted gene, 59603	within coordinates
Rr363624	regulatory region 363624	within coordinates
Rr405811	regulatory region 405811	270 bp downstream
Scyl1	SCY1-like 1 (S. cerevisiae)	403 bp upstream
Tssr157640	transcription start site region 157640	535 bp upstream
Tssr157641	transcription start site region 157641	465 bp upstream
Tssr157642	transcription start site region 157642	428 bp upstream
Tssr157643	transcription start site region 157643	413 bp upstream
Tssr157644	transcription start site region 157644	196 bp upstream