rs220782636 SNP Detail

Summary

• ID
  rs220782636
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134655770 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATTTCCCAA CAAATGAGCC ACTGTCTATT
  TAAACACTAA ATTCCCTGTC ATCACAATTT GTAGTGTGAC TAGCAGCTGC CTCTTAAGTA
  CAAATAGTAg gctggggatg tagctcaatt ggttagaatg cttcctgagt ttctgtgaac
  Y
  cAGCATCAGT AACAGTATTT TAGCCCTTCT GGAGGCAGCC CAGGGGCCAC ATACACAAAG
  GCAAATTTGC TTTTCTTTTT TTCTTTTTGG Gttttactgt gctttgagta aggatataca
  tagccatggc tgtcctggaa ctcattgtag                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321350011	CHEV_4_134484374	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220782636					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134655770 () rs orientation: forward

Symbol	Name	Function Class
Rr367744	regulatory region 367744	1575 bp upstream
Rr601870	regulatory region 601870	within coordinates
Rr601871	regulatory region 601871	758 bp proximal
Rr601872	regulatory region 601872	1949 bp proximal
Rsrp1	arginine/serine rich protein 1	1089 bp downstream
Tssr39593	transcription start site region 39593	1856 bp downstream
Tssr39594	transcription start site region 39594	1769 bp downstream
Tssr39595	transcription start site region 39595	1729 bp downstream
Tssr43947	transcription start site region 43947	1088 bp upstream