rs220783653 SNP Detail

Summary

• ID
  rs220783653
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:11177754 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCAGGCTAG GAAAAAGGAA
  ACAGTTGCAA CTTTATGTGT TCTCCACAAA ACAAAAACAA AAACAAAACC ATAGACTTGT
  AAGGAGTGTT TTCTGTCCTA GGAGACCTGT CCATGGAGAA CACCTAGTTT TCTGGGAATT
  TGCTGCAGCG CTTGATTCGG GTTTTTGTTT GTTTTGTTTT GTTTTTCAGG GGCTAGGTTG
  K
  ATTTTAGGTG TTTGTTTGTT GTTTGATTTT AAAAGTTGAG GTATTCACTT CCTTAGAACA
  AGATTATTTT CTAGCTTTGA GTGTCACATG TTAAGATGCA TTTTGTTATA TGCAACCTCT
  TTGTTCCACT GGAGTTTTAA GAGCTGGCAT TATCAAAGTA CCACGGGTGA CTTTAATGAC
  TCCATGTGGG CGTGGGAGAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353088278	MGP_WTSI_2_11094570	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220783653					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353088278	MGP_WTSI_2_11094570	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:11177754 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11198	CpG island 11198	276 bp distal
Gm74583	predicted gene, 74583	701 bp upstream
Prkcq	protein kinase C, theta	within coordinates
Rr55368	regulatory region 55368	within coordinates
Rr57618	regulatory region 57618	1954 bp distal
Tssr402	transcription start site region 402	798 bp downstream
Tssr403	transcription start site region 403	558 bp downstream
Tssr16098	transcription start site region 16098	1028 bp downstream
Tssr16099	transcription start site region 16099	890 bp downstream
Tssr16100	transcription start site region 16100	871 bp downstream
Tssr16101	transcription start site region 16101	803 bp downstream
Tssr16102	transcription start site region 16102	771 bp downstream
Tssr16103	transcription start site region 16103	744 bp downstream
Tssr16104	transcription start site region 16104	706 bp downstream
Tssr16105	transcription start site region 16105	641 bp downstream
Tssr16106	transcription start site region 16106	616 bp downstream
Tssr16107	transcription start site region 16107	593 bp downstream
Tssr16108	transcription start site region 16108	576 bp downstream
Tssr16109	transcription start site region 16109	524 bp downstream