rs220791077 SNP Detail

Summary

• ID
  rs220791077
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:160866660 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTTGTGGG TGGAAGGGAC
  AATACAGTAT GAAAGAGAAA GCTGTCATGG TGGCTCAGTG AGTAACAGCA ACTGCCTCAC
  AAGCCTGACG ATCTGACTGT AATCCCAGGA ATCCATGGTA GAGAAACTCT GCTTCTGAAT
  GCTGTACTTT AACCTCCATA TATAAGCCAC TATTGCACAC AGACACACAC ACACACACAG
  A
  GGGGGGGGGA GGGGGAGAGG GGGAGGGGGA GAGGAGGGAT GGTGAAATAA TCGCAAGCCT
  AGAATTTGTT GTTGATTAGG ACAAGAAGCT GGAACTACCT CAAAGCCACT TCCCATCAAA
  AGTTCTCCAT TTTTCTCACT GACATCATTC GCTTGACTTT TGATACCGGT ATTGTGTATT
  TAGGCATTGG GCTATTATGA                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CBA/J	CE/J	DBA/2J	FVB/NJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SPRET/EiJ	ST/bJ	SWR/J
ss405042076	MGP_WTSI_X_158521596	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CBA/J	CE/J	DBA/2J	FVB/NJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SPRET/EiJ	ST/bJ	SWR/J
rs220791077					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss405042076	MGP_WTSI_X_158521596	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:160866660 () rs orientation: forward

Symbol	Name	Function Class
Nhs	NHS actin remodeling regulator	within coordinates
Rr694852	regulatory region 694852	1497 bp proximal
Tssr164496	transcription start site region 164496	1720 bp downstream