rs220797695 SNP Detail

Summary

• ID
  rs220797695
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40716007 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTACAAGGC TGAGGATGAG
  AAGCAGAGAG ATAAGGTTTC CTCCAAGAAC TCACTGGAGT CCTATGCCTT CAACATGAAA
  GCAACTGTGG AAGATGAGAA ACTTCAAGGC AAGATCAATG ATGAGGACAA ACAGAAGATT
  CTTGACAAGT GCAATGAAAT CATCAGCTGG CTGGATAAGA ACCAGGTATG TGTTTTGCCA
  R
  TAAGTAGATG TTCATTCAGA AAAGGGCTGA GAGGGGTCAC AATGATGATG AATGGTCCAA
  ACATTCGCGG TTTCCACCAG AACGCAAGGC AGTGTTGGCA GTTACCTTCC TTGGATGTCT
  GAGTGACTCA ATAGCTAAGG GTTCTTTAGG CTTAGTTGTC AGTCTCCTCC CCCCAAAGTA
  ATTGGAGATC TTTTAATAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377322649	MGP_WTSI_9_40612794	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220797695					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377322649	MGP_WTSI_9_40612794	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40716007 () rs orientation: forward

Symbol	Name	Function Class
Hspa8	heat shock protein 8	within coordinates
Rr194757	regulatory region 194757	1394 bp proximal
Rr206240	regulatory region 206240	within coordinates
Rr206241	regulatory region 206241	393 bp proximal
Rr401324	regulatory region 401324	1490 bp upstream
Snord14c	small nucleolar RNA, C/D box 14C	1043 bp downstream
Snord14d	small nucleolar RNA, C/D box 14D	631 bp downstream
Snord14e	small nucleolar RNA, C/D box 14E	37 bp upstream
Tssr84485	transcription start site region 84485	476 bp downstream
Tssr84486	transcription start site region 84486	28 bp upstream
Tssr84487	transcription start site region 84487	1927 bp upstream