rs220798604 SNP Detail

Summary

• ID
  rs220798604
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:110836717 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGGGATGC CATGGAGGAC
  GGCAGAGAGG ACTGAGGCCT TCAGCTCCCC TGAAGCAACA TTTACTTGAC ATTGTAAACC
  GAGGGATGCA CACTGGGGAT GGGACTCTGA CCCTCTGTGA GAACAGCCCA GGAACTGTGT
  GTTGCATTGC GGAAACCCTC TGAAGGGTCA GCACTGTCGA AACAAAACAA AGTCAAAATG
  R
  AGACCCCAGG CACCCAGTTT AATGCAAGCT GGAGTTCAGA TGTTGTCTCA GATATGATTC
  TTATTCAGCC AGTCAGTATG TGTTTCCTGA AATCTCACTG GTGTCACAGA GAGACAGCAG
  AGTGATATGC GTTGGCGGCC GGATGACTTG AAATGGCACT GCAAACACAA GATGATTTTA
  CTTACGAAAT ATGGAGTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323195371	CHEV_9_110910153	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220798604					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110836717 () rs orientation: forward

Symbol	Name	Function Class
1700061E17Rik	RIKEN cDNA 1700061E17 gene	within coordinates
Gm10030	predicted gene 10030	within coordinates
Tssr87455	transcription start site region 87455	1472 bp upstream