rs220800365 SNP Detail

Summary

• ID
  rs220800365
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149983648 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCATGTTA TAAAGACTGA
  CATTTTAGAC ATTTTGAAGG CCCTGTAAGT GTTTATTAAT TAGTTAGAAC TTAATTGATT
  AAAAAATATA TCCAAAGCAC TATAGGCATT AGAATTCGTG CATCAAGAAA TGATGACAAA
  TAATACTGTT ATTTATATAA ATAACTAAAA AGGGTGTCTA ATGAAGAAAT ATATTTTATT
  R
  CAAAGAAATT ATAAAACATT TTGAAGATTA TATGCTTTAA AAGTTTAAGA TGAAAAAATA
  ATCAACCTTA GAAAAAATGT ATAAAAATAT ATAAATTGTT AATGTCATTG ATTAAAAAAA
  AAAAAAACTA GCCAACATGA TTTTTGTGAA TATCAACCTG CTGATTGAAC CTGGGAATTC
  AGGTTAAGTA TGTGACTGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	DBA/1J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss351888793	MGP_WTSI_1_151955027	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CE/J	CZECHII/EiJ	DBA/1J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs220800365					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351888793	MGP_WTSI_1_151955027	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149983648 () rs orientation: forward

Symbol	Name	Function Class
Ptgs2	prostaglandin-endoperoxide synthase 2	within coordinates
Tssr9286	transcription start site region 9286	1928 bp downstream
Tssr9287	transcription start site region 9287	1412 bp downstream
Tssr9288	transcription start site region 9288	1298 bp downstream
Tssr9289	transcription start site region 9289	1281 bp downstream
Tssr9290	transcription start site region 9290	1127 bp downstream
Tssr9291	transcription start site region 9291	1079 bp downstream
Tssr9292	transcription start site region 9292	951 bp downstream
Tssr9293	transcription start site region 9293	935 bp downstream
Tssr9294	transcription start site region 9294	912 bp downstream
Tssr9295	transcription start site region 9295	885 bp downstream
Tssr9296	transcription start site region 9296	873 bp downstream
Tssr9297	transcription start site region 9297	860 bp downstream
Tssr9298	transcription start site region 9298	834 bp downstream
Tssr9299	transcription start site region 9299	816 bp downstream
Tssr9300	transcription start site region 9300	797 bp downstream
Tssr9301	transcription start site region 9301	664 bp downstream
Tssr9302	transcription start site region 9302	640 bp downstream
Tssr9303	transcription start site region 9303	564 bp downstream
Tssr9304	transcription start site region 9304	544 bp downstream
Tssr9305	transcription start site region 9305	535 bp downstream
Tssr9306	transcription start site region 9306	523 bp downstream
Tssr9307	transcription start site region 9307	497 bp downstream
Tssr9308	transcription start site region 9308	480 bp downstream
Tssr9309	transcription start site region 9309	458 bp downstream
Tssr9310	transcription start site region 9310	433 bp downstream
Tssr9311	transcription start site region 9311	410 bp downstream
Tssr9312	transcription start site region 9312	392 bp downstream
Tssr9313	transcription start site region 9313	384 bp downstream
Tssr9314	transcription start site region 9314	365 bp downstream
Tssr9315	transcription start site region 9315	273 bp downstream
Tssr9316	transcription start site region 9316	88 bp downstream
Tssr9317	transcription start site region 9317	178 bp upstream
Tssr9318	transcription start site region 9318	907 bp upstream