rs220801667 SNP Detail

Summary

• ID
  rs220801667
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:61927438 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAATTCCA AATTTGGATT
  TGAAGGCAGC TCATCATGGT ATATGTAAGT GGGTTTTTGT CATGGTGTAG TCAAAATTCT
  TAGTGTTGTG AAATAACGCA GATCCTCGTT CTACACAGGG CATGACTGGA GTGGGTATAA
  TTCTGCGATA TTGCTATTAA TTAAAAAAAG TTAAAATCTT CTATACAGAG GTATTTTGCA
  Y
  GTATGATGTC TCTGCACCAC CTGTGTGCCT GGTGCCCAGG GAGGCTAGAA GAAAGTGCTG
  GCTCTACTGG GACTTAAATT ATAGCTGCCT GTGAGCTACT TTGCATGCAG ATGCTGGGAA
  CTGAACCTGG GTCCTCTGCA GGAGGAGCGA GTGCTCTTAA CTGTGGAGCC ATCTCTCCAG
  TTCCCGGTTG CTGTTGTTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325645779	CHEV_18_61954021	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220801667					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:61927438 () rs orientation: forward

Symbol	Name	Function Class
Gm35919	predicted gene, 35919	486 bp downstream
Rr346544	regulatory region 346544	1238 bp distal
Rr346545	regulatory region 346545	38 bp distal
Rr351728	regulatory region 351728	1293 bp distal
Rr356351	regulatory region 356351	230 bp distal