rs220803799 SNP Detail

Summary

• ID
  rs220803799
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:133629669 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tttctcctt cttttcttcc ttcttcttct
  tcttcttctt cttcttcttc ttcttcttct tcttcttctt cctcctcctc ctcctcctcc
  tcctcctctt cctcctcctc ctcctcctcc tcctcctcct cctcctcctc cttcttctTC
  R
  tcttcttttt aaaaagattt atttatttta tagatgtgag tacactgtag ctattttcag
  acacgccaga agagggcatc aaatcccatt acagatggtt gtgagccacc atgtggttgt
  tgcaaattga actcagggtc tctggaagag                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319980794	CHEV_1_135598508	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220803799					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:133629669 () rs orientation: forward

Symbol	Name	Function Class
Atp2b4	ATPase, Ca++ transporting, plasma membrane 4	747 bp downstream
Rr418693	regulatory region 418693	62 bp proximal