rs220809187 SNP Detail

Summary

• ID
  rs220809187
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:84239505 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGATTTGG GACACTCAGT
  GGCCTCCCTT TTGGGTAATA GAAGCCTCCT CCAGATCTGC CTTGGTTCCG AGGCTTGAAA
  GCCTCAAGTG CCCAAAGTTC CTCAGCTTCT CAAAGTCTTT AAGGCCTGGA TGGAGGGTCG
  CAGCCGAGGT CCACATGCCC CTCATTGTGA GCGTATGGGG CGGGGAATGA TTAACTCCAT
  Y
  GAGCCCGCCA TATGCAGGGC CCAGACGAAC CCGGGCTCTA AGCTCAGGGC CAGCAACATG
  GAACACAGCA CCCGGCCAGG GAGGCGAGCC TGCGGGGGCG GGCGAGCCGG ATGACAGGTC
  TGAGGTGCAC CAGCAGCTCC CGGCGCGCGG GGCGAGGCGG CTCCACCACT GTCCTCCGGC
  CGGCGCGCGC TCAACCCTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss386709088	MGP_WTSI_12_85533681	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220809187					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss386709088	MGP_WTSI_12_85533681	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:84239505 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4863	CpG island 4863	within coordinates
Gm31513	predicted gene, 31513	1173 bp upstream
Mideas	mitotic deacetylase associated SANT domain protein	within coordinates
Rr403405	regulatory region 403405	1310 bp upstream
Rr469585	regulatory region 469585	318 bp distal
Rr469586	regulatory region 469586	683 bp proximal
Rr469587	regulatory region 469587	1274 bp proximal
Tssr116986	transcription start site region 116986	1009 bp downstream
Tssr116987	transcription start site region 116987	1039 bp downstream
Tssr116988	transcription start site region 116988	1097 bp downstream
Tssr116989	transcription start site region 116989	1214 bp downstream
Tssr116990	transcription start site region 116990	1256 bp downstream
Tssr116991	transcription start site region 116991	1276 bp downstream