rs220809347 SNP Detail

Summary

• ID
  rs220809347
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:142679811 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATGCAGAT CGCAGCAGAG
  GATGCTCTCC CCACCCCCAC ACCCACCCCG TGAGCCTGGC AGTGTGCCCA GGCAGCCTGC
  CCCTGCGCTC CCAGGACAGT CCCTACCTCT GTGGCTCCCT TCCTTCTTTC TTTCCTTCCT
  TCTTCCCTTT CTTGGCTTTT ATTTTAAAAT GTTTTCTTCC CGTTTCTTTG TTTTATTTTT
  A
  TTTCTTGTTT TTTTTTTTTT TTTTTTTTTT TTTTTTTTTT TTTGCCCTTT TTGAGACAAG
  GATAGCCAAG AACTCACTGT ATAGACCAGT TGTCCTTAAA TTCCTGATCC TCTTGCCTGT
  ACCTTGCCAA CTGCTGACAT TACAAGCGTA TGTCACCACA CCCTGATAAA AGCATGAACA
  GCGCTGTGGG CTGGAATAGT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	RF/J	SEA/GnJ	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss366997586	MGP_WTSI_5_143170010	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	RF/J	SEA/GnJ	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs220809347					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366997586	MGP_WTSI_5_143170010	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:142679811 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16953	CpG island 16953	1519 bp distal
Gm40352	predicted gene, 40352	852 bp upstream
Rr127813	regulatory region 127813	within coordinates
Slc29a4	solute carrier family 29 (nucleoside transporters), member 4	within coordinates
Tssr49584	transcription start site region 49584	1575 bp downstream
Tssr49585	transcription start site region 49585	1554 bp downstream
Tssr49586	transcription start site region 49586	42 bp upstream