rs220813634 SNP Detail

Summary

• ID
  rs220813634
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72951100 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGTGGTGA CGTCGGCACA
  CGCCTTTAAT CCCAGCACTC GGGAGGAGGC AGAGGCAGAC GGATTTCTGA GTTCAAGGCC
  AGCCTGGTCT ACAGAGTGAG TTCCAGGACA GCCAGGGCTA CACAGAAAAA CCCTGTCTCG
  AAAAACCAAA AAGAAAAAAA AAAAAAGAGC TAGTGCCTGA AGGAAGATGG TTGCCTTGCT
  Y
  TTCCTGGGGA GGGTATTTCT CTTCAGCCCT GATGGAATGA TAGAAAAGAT TCTGTACCGG
  TCCAGTTTAT TGGGGTTGCT TACAAGCGTG GGTGACTCCA GTAGCTGCCA TCTACAGATT
  GAGAAACTGC ACTGTGGTGC AGTCCTAGTA GCTACAGACA GGAGGGGTGA CTGGGTGTGC
  AGGTGGGTGG GACAGCTGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378031352	MGP_WTSI_9_72891625	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220813634					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378031352	MGP_WTSI_9_72891625	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72951100 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22026	CpG island 22026	838 bp proximal
Pigbos1	Pigb opposite strand 1	1039 bp downstream
Rab27a	RAB27A, member RAS oncogene family	1036 bp upstream
Rr197291	regulatory region 197291	1700 bp distal
Rr197292	regulatory region 197292	700 bp distal
Rr197293	regulatory region 197293	within coordinates
Rr206716	regulatory region 206716	300 bp proximal
Tssr86076	transcription start site region 86076	984 bp upstream
Tssr86077	transcription start site region 86077	1015 bp upstream
Tssr86078	transcription start site region 86078	1049 bp upstream
Tssr86079	transcription start site region 86079	1068 bp upstream