rs220817453 SNP Detail

Summary

• ID
  rs220817453
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:58158741 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATACTAATA GAATGTTTCT
  AGGGGGCTGG TGAGATGGCT CAGGGGTTAA GAGCACTGAC TGCTCTTCCA GAGGTCCTGA
  GCTCAATTCC CAGCAACCAC ATGGTGGCTA CAACCATCTG TAATGGGATC TGATGCCCTC
  TTCTGGTGTG TCTGAAGACA TCGACAGTGT ACTCACATAC ATGAAATAAA TTAATTAATT
  Y
  AAAAAAAAAA AAAAAAGAAT GTCCCTCAAG GGACATTGTC ATCTACTCTA AATTTTTTGT
  TTGTTCGTTT GTTTTTGTTT GTTTGTTTGG TTTGGTTTGT TTGTTTTTTG TTTTTTGTTT
  TTTTTTTGGT TTTTCAAGAC AGGGTTTCCC TGTACAGCCC TGGCTGTCCT GGAACTCACT
  TTGTAGACCA GCCTGGTCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LEWES/EiJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377705024	MGP_WTSI_9_58099265	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LEWES/EiJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220817453					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377705024	MGP_WTSI_9_58099265	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:58158741 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21845	CpG island 21845	1560 bp proximal
Pml	promyelocytic leukemia	1672 bp upstream
Rr401408	regulatory region 401408	1494 bp upstream
Rr679902	regulatory region 679902	1182 bp distal
Rr679903	regulatory region 679903	1319 bp distal
Rr679904	regulatory region 679904	374 bp distal
Rr679905	regulatory region 679905	50 bp distal
Rr679906	regulatory region 679906	1250 bp proximal
Stoml1	stomatin-like 1	1706 bp upstream
Tssr85378	transcription start site region 85378	1717 bp upstream
Tssr85379	transcription start site region 85379	1829 bp upstream
Tssr85380	transcription start site region 85380	1861 bp upstream
Tssr89890	transcription start site region 89890	1818 bp upstream
Tssr89891	transcription start site region 89891	1786 bp upstream
Tssr89892	transcription start site region 89892	1667 bp upstream