rs220830786 SNP Detail

Summary

• ID
  rs220830786
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:11176001 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAAAATACT CAGTGGGAAA
  CATAGTCATG GAGAATATGT TTCCTGACTT AAGGCATAGC TGTGTGATCA CTCTGTCATT
  TCTCCCCAAC CCAGTAGGAT CTACTGAAGA CTGGCTGGAG AAGCCAGTCC TTTCATCTTT
  GAACAAGAGG ATCCTTAGCA GTCACAGACT GGGGCAGAAG TGGGGACCAT CACTCCAGCC
  Y
  TTTGACCTTG TTCCCAGGCA TGACACACTT TTCTGCCAAA TGTAATAGCC AAAATATAAT
  GGAGGCCTAC TATGTGCCAG ACTTTGATGT CCTGAGGTCA TCATACTTCA GGGCTGGAAG
  CACAGCCTCT GTATTGTAAG ATCCTGACTT GTGGGCTAGT TCAGTGCTTA TGTATCAACA
  AATGGCAAAG TGGATTAATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353088232	MGP_WTSI_2_11092817	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220830786					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353088232	MGP_WTSI_2_11092817	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:11176001 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11198	CpG island 11198	822 bp proximal
Gm74583	predicted gene, 74583	within coordinates
Prkcq	protein kinase C, theta	921 bp upstream
Rr37311	regulatory region 37311	1001 bp distal
Rr55368	regulatory region 55368	599 bp proximal
Rr57618	regulatory region 57618	201 bp distal
Tssr402	transcription start site region 402	950 bp upstream
Tssr403	transcription start site region 403	1192 bp upstream
Tssr16098	transcription start site region 16098	691 bp upstream
Tssr16099	transcription start site region 16099	843 bp upstream
Tssr16100	transcription start site region 16100	864 bp upstream
Tssr16101	transcription start site region 16101	890 bp upstream
Tssr16102	transcription start site region 16102	971 bp upstream
Tssr16103	transcription start site region 16103	992 bp upstream
Tssr16104	transcription start site region 16104	1026 bp upstream
Tssr16105	transcription start site region 16105	1098 bp upstream
Tssr16106	transcription start site region 16106	1119 bp upstream
Tssr16107	transcription start site region 16107	1139 bp upstream
Tssr16108	transcription start site region 16108	1166 bp upstream
Tssr16109	transcription start site region 16109	1198 bp upstream
Tssr22604	transcription start site region 22604	1103 bp upstream