rs220831542 SNP Detail

Summary

• ID
  rs220831542
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:185417873 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATAGCAGGA AGGATGTGGT
  GACAGGCAGG GATGCAGGGG CACTGGGGAC TCAGCACCAG CAATTTGGTA AAACAACCCC
  AGAAGGCCTG TGCTCCTGTC TTAAGTATTG TGAAGAGAGC TTAGTAGTTT CAGCTAGGCA
  GACACAGGGT GGAATCAATG AAGATGTAAG GGGAGCTTAA CTCTCCAGTA GAACATTTAC
  M
  CAAAGACATT TCAGAATTTA AGTTGTGACC CTTGGCTCCC TCCCCTACCT TTCTCCCCCA
  ACTCCCTGCC CTGTTTCCCC ATTCCTTCAT CTTATTTTTT CCTTTCTCCC TTTTCCTTTT
  CTTTATCTCT TTCCCACACC CCTCCCTTCC CCTTTTCCAT ATCTCTTCCC CTCCCCATCC
  TTTGCCTCCC CTTCCACACC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320178647	CHEV_1_187509555	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220831542					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:185417873 () rs orientation: forward

Symbol	Name	Function Class
Rr425422	regulatory region 425422	857 bp distal
Rr425423	regulatory region 425423	669 bp distal