rs220833890 SNP Detail

Summary

• ID
  rs220833890
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:92285649 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAAAAATA AACCCTCAGG
  TTTGACAGCT TGCAGTCCGT CCCGCTCTCG GCGACAAAAC ACCTACCAGC CGATGCTCCT
  AGTCTAATCA GAGCCTCGGG AGCCGACTGG GCAGGGCTGC GACCACGTGG GTGACCGCGG
  CCAGCAGCAG CAAGCAGCGC AAGGAGGAGG AGGGGGCGTG CCCAAGTGGT GGGAGGCCTG
  Y
  TGGTAGGCGT GGCCTGTGGG GCCGGGCAGG TGGGCGTGGC CTGCGGCCCG GGGCTCCCTC
  CTCTCCCCTT TTGCCTTCGC CCTTCGAGCC GCCACGTAAC GCCACGTCCC CGCGCATGCG
  CACCGCGGCT GGTGTCCGCG GCTGTTTCCG GGCTCGGGGG GCCGGAGAGG CTGCTGAGTA
  GGAGGCGGCG GTGGCGGAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss365876664	MGP_WTSI_5_92566816	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220833890					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365876664	MGP_WTSI_5_92566816	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:92285649 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16052	CpG island 16052	within coordinates
Gm71614	predicted gene, 71614	65 bp upstream
Rr399160	regulatory region 399160	within coordinates
Rr614570	regulatory region 614570	76 bp distal
Rr614571	regulatory region 614571	391 bp distal
Rr614572	regulatory region 614572	within coordinates
Rr614573	regulatory region 614573	167 bp proximal
Tssr47284	transcription start site region 47284	59 bp upstream
Tssr47285	transcription start site region 47285	106 bp upstream
Tssr47286	transcription start site region 47286	150 bp upstream
Tssr51846	transcription start site region 51846	88 bp upstream
Tssr51847	transcription start site region 51847	28 bp upstream
Tssr51848	transcription start site region 51848	4 bp upstream
Uso1	USO1 vesicle docking factor	148 bp upstream