rs220835545 SNP Detail

Summary

• ID
  rs220835545
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:70989355 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTCCCCCA ATGTAACTCT
  GGCTAGCCAT TATCATTTTA CTAGGAAATA GGATACAGAC GTTGGTCGGA AGTCATTCTT
  GAGCATGATC TTGTGCTCGA AATGAATAGA AAGAGCAAGA TAGCATCTTC AAAGCTTTTG
  GCGTCCTGAG TCCCAGGAGA CTTGCAGACC AGCATAGGGG GTTGCTGGCT GCTTACCTGT
  R
  AGGAACCGAG AGCCCCCACC GCGCGAACTT ACCACCGGTT TCCAGCCAGC TGGACCCAGA
  GAATGGGGGA GGCTGCGGGT CTTCCGGGCT CCCAGACGCT GCAGCTGCGA GTCCCAGGGC
  GCACGCAGGT GTCTGCTAGG GGGAAAAAAA AAACGAGGAC ACCTCAGTGA AAATGCGGGC
  ACTGCAGAGC TCAGCCAAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss388988894	MGP_WTSI_13_70980114	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220835545					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388988894	MGP_WTSI_13_70980114	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:70989355 () rs orientation: forward

Symbol	Name	Function Class
Adamts16	ADAM metallopeptidase with thrombospondin type 1 motif 16	within coordinates
Cpgi5821	CpG island 5821	1 bp proximal
Gm36529	predicted gene, 36529	within coordinates
Rr482298	regulatory region 482298	1081 bp distal
Rr482299	regulatory region 482299	776 bp distal
Rr482300	regulatory region 482300	849 bp distal
Rr482301	regulatory region 482301	576 bp distal
Rr482302	regulatory region 482302	526 bp distal
Rr482303	regulatory region 482303	486 bp proximal
Rr482304	regulatory region 482304	565 bp proximal
Tssr123158	transcription start site region 123158	467 bp downstream
Tssr123159	transcription start site region 123159	493 bp downstream
Tssr123160	transcription start site region 123160	526 bp downstream
Tssr123161	transcription start site region 123161	554 bp downstream