rs220835681 SNP Detail

Summary

• ID
  rs220835681
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:58417481 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAAAAGC AACCAAGACT
  AACCCTGACA GGATTAGGAT TCACCCTCGG GGATGTTAAG ATGCTGAGAC TGTTGTCCTA
  ACCCTGCCTC AACTGCATCA AAACTGTTTC CGCTAAAGAC TTGCTTCGAG GACAACCCAC
  AACAGCTAGC TCCTCAGTCC AGCCTTTCCG ACTGTTGCAG GTGGAGCTTC AGTGAAGCCT
  A
  CATTTTCTCA GCAAAGACTG GACAACAAAT GCTAGCTTTC TTAAGACTAA CAATTTTTTC
  TAAATTTCCC TGAAAAGGAT TCTTTGCCCC AATTCAGCAG AAAGAAATAA TAAGAGACTG
  TTGTTCCATT CCTTTAAATT GGGGTGGATG GTTTTGGCTA TTTGATGGTA ATATACACAT
  TGTCATGTTA GGAAATGATT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324353127	CHEV_13_58371028	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220835681					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:58417481 () rs orientation: forward

Symbol	Name	Function Class
Gkap1	G kinase anchoring protein 1	within coordinates
Rr276751	regulatory region 276751	720 bp proximal
Rr388493	regulatory region 388493	21 bp upstream