rs220836339 SNP Detail

Summary

• ID
  rs220836339
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:35021975 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGGGCTTAC AGCCTGTCCC CAGAGACACA
  AATCCCTTGG CTTCACAGCA TCTCAGAGGA GCCTTTGGCT CTGCCAGTAC TCAGAGGTAC
  CTTCTGAACT CAAGCTTGGA AGCGTGAGAT GTGTGCAGAC TGGAGAAAGC AGAGGGACTC
  R
  GGAAGCCTTA CTAGAACACT GGCTCAGGGT GACCTGAAGG ACAAAGGCAA TTCAGAATGG
  TAATTACCAA AGATAACCAA GCCTTGTGGC AAGGCTATGG GGAGCAAAGG CTGAGAGGTG
  ACAAAGCCAT GTGGCATGCT ACCAGGAACA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322899073	CHEV_9_34918264	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220836339					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:35021975 () rs orientation: forward

Symbol	Name	Function Class
Rr206179	regulatory region 206179	1025 bp proximal
Rr383192	regulatory region 383192	665 bp upstream
St3gal4	ST3 beta-galactoside alpha-2,3-sialyltransferase 4	within coordinates