rs220839117 SNP Detail

Summary

• ID
  rs220839117
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:14950849 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATAAAGGC ACATGATGAG
  TCTGAGAACA CTTAAAATGT AGTCAGATAT TTTTCATTAT ACTTACACAT AGATTCTAAT
  ATATAGGTAA TGTGATGTCT AGGTGCCTCC ATAGAAACAC AAAAAAACTG TACCCTTCTC
  AATTTGAATT CTAAATAATA TGGCCTCAGG TCCACAATAG ATTCAATACA AAAAAATTGT
  W
  CTCAAAGTCA AATAAGAAAA AAAGTGTTAG GTGAAGAGAA ATGTTTAAAT AAAAATACAC
  AAAAAGAACA TTGAAAGGTG TGTCCCCGGG ACACCCACGG TCCCTGGGAA GCCATACAGC
  TACCTTTCTT TTCTATTTTT TAAGTTTTGT GTTTTTTGTT TTGTTTTGTT TTGGGGGGGG
  GGGGTTGGTT TCGGCTTGTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss357061064	MGP_WTSI_3_14885789	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	A	T	T	T	T	T	T	T	T	T	A	T	T	A	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs220839117					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	A	T	T	T	T	T	T	T	T	T	A	T	T	A	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357061064	MGP_WTSI_3_14885789	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:14950849 () rs orientation: forward

Symbol	Name	Function Class
Car2	carbonic anhydrase 2	484 bp upstream
Cpgi12992	CpG island 12992	226 bp proximal
Rr573722	regulatory region 573722	198 bp proximal
Rr573723	regulatory region 573723	350 bp proximal
Rr573724	regulatory region 573724	650 bp proximal
Rr573725	regulatory region 573725	697 bp proximal
Rr573726	regulatory region 573726	1380 bp proximal
Rr573727	regulatory region 573727	1433 bp proximal
Rr573728	regulatory region 573728	1615 bp proximal
Tssr826	transcription start site region 826	415 bp upstream
Tssr827	transcription start site region 827	629 bp upstream
Tssr828	transcription start site region 828	645 bp upstream
Tssr829	transcription start site region 829	735 bp upstream
Tssr830	transcription start site region 830	816 bp upstream
Tssr831	transcription start site region 831	837 bp upstream
Tssr832	transcription start site region 832	926 bp upstream
Tssr28466	transcription start site region 28466	894 bp upstream
Tssr28467	transcription start site region 28467	1026 bp upstream
Tssr28468	transcription start site region 28468	1599 bp upstream