rs220839407 SNP Detail

Summary

• ID
  rs220839407
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149982131 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCTTCTTA AATCTTGCAT
  ATCTTTATCT CATCAAACAA AGGGGTCCAA GTTCAGTTTT AAATAAGCAT TTAAGGCAGA
  TACTGACAAC AATCTCATTT TTTAAAATGT TGTCTTGAGA CAAATAATTT GAAATTTCTA
  AATTGGGAGT TTGAATCACT TTTGAAAGCT CTTACTTTCT TAAGCTGTCA GGTTTGTACC
  S
  ACATGGAGTA AACAGCTATC ATAAACGTAA ATCTCCAAAA CTAGTAGAAA TTATGTCATG
  ATTGATGGTT AAGATACCAT GTCAGGGATT GTCTTTTCTT AGAAGTAGTG AAAGCTACTT
  ACTATGACAA TCAGACCTTC CTTGTATGTC AAAATGCTGG TGTGGAAGGT GGTGGAGCCC
  GTGCTGCTCT GTCTTAACTA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351888776	MGP_WTSI_1_151953510	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220839407					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351888776	MGP_WTSI_1_151953510	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149982131 () rs orientation: forward

Symbol	Name	Function Class
Ptgs2	prostaglandin-endoperoxide synthase 2	within coordinates
Rr12935	regulatory region 12935	1731 bp distal
Rr24983	regulatory region 24983	1835 bp distal
Tssr9259	transcription start site region 9259	1986 bp downstream
Tssr9260	transcription start site region 9260	1934 bp downstream
Tssr9261	transcription start site region 9261	1915 bp downstream
Tssr9262	transcription start site region 9262	1894 bp downstream
Tssr9263	transcription start site region 9263	1882 bp downstream
Tssr9264	transcription start site region 9264	1833 bp downstream
Tssr9265	transcription start site region 9265	1806 bp downstream
Tssr9266	transcription start site region 9266	1717 bp downstream
Tssr9267	transcription start site region 9267	1382 bp downstream
Tssr9268	transcription start site region 9268	1312 bp downstream
Tssr9269	transcription start site region 9269	975 bp downstream
Tssr9270	transcription start site region 9270	944 bp downstream
Tssr9271	transcription start site region 9271	921 bp downstream
Tssr9272	transcription start site region 9272	890 bp downstream
Tssr9273	transcription start site region 9273	846 bp downstream
Tssr9274	transcription start site region 9274	826 bp downstream
Tssr9275	transcription start site region 9275	794 bp downstream
Tssr9276	transcription start site region 9276	780 bp downstream
Tssr9277	transcription start site region 9277	724 bp downstream
Tssr9278	transcription start site region 9278	703 bp downstream
Tssr9279	transcription start site region 9279	685 bp downstream
Tssr9280	transcription start site region 9280	585 bp downstream
Tssr9281	transcription start site region 9281	565 bp downstream
Tssr9282	transcription start site region 9282	531 bp downstream
Tssr9283	transcription start site region 9283	516 bp downstream
Tssr9284	transcription start site region 9284	504 bp downstream
Tssr9285	transcription start site region 9285	490 bp downstream
Tssr9286	transcription start site region 9286	411 bp downstream
Tssr9287	transcription start site region 9287	96 bp upstream
Tssr9288	transcription start site region 9288	212 bp upstream
Tssr9289	transcription start site region 9289	229 bp upstream
Tssr9290	transcription start site region 9290	385 bp upstream
Tssr9291	transcription start site region 9291	431 bp upstream
Tssr9292	transcription start site region 9292	550 bp upstream
Tssr9293	transcription start site region 9293	579 bp upstream
Tssr9294	transcription start site region 9294	599 bp upstream
Tssr9295	transcription start site region 9295	615 bp upstream
Tssr9296	transcription start site region 9296	637 bp upstream
Tssr9297	transcription start site region 9297	646 bp upstream
Tssr9298	transcription start site region 9298	672 bp upstream
Tssr9299	transcription start site region 9299	694 bp upstream
Tssr9300	transcription start site region 9300	711 bp upstream
Tssr9301	transcription start site region 9301	845 bp upstream
Tssr9302	transcription start site region 9302	875 bp upstream
Tssr9303	transcription start site region 9303	937 bp upstream
Tssr9304	transcription start site region 9304	961 bp upstream
Tssr9305	transcription start site region 9305	979 bp upstream
Tssr9306	transcription start site region 9306	991 bp upstream
Tssr9307	transcription start site region 9307	995 bp upstream
Tssr9308	transcription start site region 9308	1028 bp upstream
Tssr9309	transcription start site region 9309	1042 bp upstream
Tssr9310	transcription start site region 9310	1073 bp upstream
Tssr9311	transcription start site region 9311	1085 bp upstream
Tssr9312	transcription start site region 9312	1110 bp upstream
Tssr9313	transcription start site region 9313	1130 bp upstream
Tssr9314	transcription start site region 9314	1141 bp upstream
Tssr9315	transcription start site region 9315	1235 bp upstream
Tssr9316	transcription start site region 9316	1418 bp upstream
Tssr9317	transcription start site region 9317	1695 bp upstream