rs220843187 SNP Detail

Summary

• ID
  rs220843187
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:84574563 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTTTGTAGC TATATTGACA CAGCACGTAG
  GGAACATGAG GAAGACAGTT CTGGCCCCAA CAAGGGACCC AAAGAGAGGA AGGAATAACA
  TTACCTATTC CCCCCCCCCC CCCAAGAGCA CACTGACAAT GGTACGTGGT AGAACACCCA
  K
  GTAGCTTCAC CTCTTAAAGG TGCCACCATT TCCCAATAGC ACCACAGGCC TTTAACACAT
  AGGTCTTTGG AGAATACTCA TCCAAGCTAT AAACAGTTTC CTTCTCCAGT GAGGCAGAAC
  TTTTTTGATC TTTCACTGCC GTTCTTATTC                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325261884	CHEV_16_84777920	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220843187					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:84574563 () rs orientation: forward

Symbol	Name	Function Class
Jam2	junction adhesion molecule 2	within coordinates
Rr392068	regulatory region 392068	506 bp upstream