rs220845214 SNP Detail

Summary

• ID
  rs220845214
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:156480180 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGCATATGC AGAGATGTAT GTACATGGGA
  GTATGTGCTT CCTTGAGTGT GCTTTTTGTT CTGAGGAAAG AAGTTGACAG TCAAAAGTTA
  GGAATAGGCC AAGTGTATGG TACACACTTC ATATCCCGGC AGTTGGCGGG GATGGGGGGT
  K
  GGGggggggc agaggcatgc acatttcagt ggctttgagc ccaacttggt caacttagta
  agtttcaggg cagccaaagc tgcataatga gatcttggct gaaaaaaaaa aaTCTAGGAA
  GGACTGACTG AGTTAGCAGA AGGAGTCTTC                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325987885	CHEV_X_154135116	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220845214					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:156480180 () rs orientation: forward

Symbol	Name	Function Class
Rr8402	regulatory region 8402	1820 bp proximal
Smpx	small muscle protein, X-linked	1789 bp upstream
Tssr162436	transcription start site region 162436	1801 bp upstream
Tssr162437	transcription start site region 162437	1885 bp upstream
Tssr162438	transcription start site region 162438	1929 bp upstream
Tssr162439	transcription start site region 162439	1969 bp upstream
Tssr162440	transcription start site region 162440	2000 bp upstream