rs220855866 SNP Detail

Summary

• ID
  rs220855866
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149979549 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTAAATCAT CAATATTGAA
  TAAGAAATTA TAGTAAAAAA TCAGTAAATT GAACTTTCTC CATACTTAAT TTTCTAGGTG
  GACTTAAATC ACATTTATGG TGAAACTCTG GACAGACAAC ATAAACTGCG CCTTTTCAAG
  GATGGAAAAT TGAAATATCA GGTATTTTCC TTATGGTTTA AAAATGACCA TCTGTCATTT
  R
  GACTTACATA TTAAAACTAT TGTGGCTTTT TTTTCCTTCT TTTAACTCTG TTATTATTGT
  TGTGATTTAG GTCATTGGTG GAGAGGTGTA TCCCCCCACA GTCAAAGACA CTCAGGTAGA
  GATGATCTAC CCTCCTCACA TCCCTGAGAA CCTGCAGTTT GCTGTGGGGC AGGAAGTCTT
  TGGTCTGGTG CCTGGTCTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351888750	MGP_WTSI_1_151950928	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220855866					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351888750	MGP_WTSI_1_151950928	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149979549 () rs orientation: forward

Symbol	Name	Function Class
Ptgs2	prostaglandin-endoperoxide synthase 2	within coordinates
Rr12935	regulatory region 12935	452 bp proximal
Rr24983	regulatory region 24983	484 bp proximal
Tssr242	transcription start site region 242	993 bp downstream
Tssr9230	transcription start site region 9230	1685 bp downstream
Tssr9231	transcription start site region 9231	1652 bp downstream
Tssr9232	transcription start site region 9232	1609 bp downstream
Tssr9233	transcription start site region 9233	1153 bp downstream
Tssr9234	transcription start site region 9234	1124 bp downstream
Tssr9235	transcription start site region 9235	1093 bp downstream
Tssr9236	transcription start site region 9236	1068 bp downstream
Tssr9237	transcription start site region 9237	1036 bp downstream
Tssr9238	transcription start site region 9238	1005 bp downstream
Tssr9239	transcription start site region 9239	971 bp downstream
Tssr9240	transcription start site region 9240	957 bp downstream
Tssr9241	transcription start site region 9241	927 bp downstream
Tssr9242	transcription start site region 9242	911 bp downstream
Tssr9243	transcription start site region 9243	784 bp downstream
Tssr9244	transcription start site region 9244	733 bp downstream
Tssr9245	transcription start site region 9245	697 bp downstream
Tssr9246	transcription start site region 9246	678 bp downstream
Tssr9247	transcription start site region 9247	543 bp downstream
Tssr9248	transcription start site region 9248	110 bp downstream
Tssr9249	transcription start site region 9249	96 bp downstream
Tssr9250	transcription start site region 9250	62 bp upstream
Tssr9251	transcription start site region 9251	108 bp upstream
Tssr9252	transcription start site region 9252	163 bp upstream
Tssr9253	transcription start site region 9253	193 bp upstream
Tssr9254	transcription start site region 9254	220 bp upstream
Tssr9255	transcription start site region 9255	239 bp upstream
Tssr9256	transcription start site region 9256	479 bp upstream
Tssr9257	transcription start site region 9257	503 bp upstream
Tssr9258	transcription start site region 9258	526 bp upstream
Tssr9259	transcription start site region 9259	551 bp upstream
Tssr9260	transcription start site region 9260	606 bp upstream
Tssr9261	transcription start site region 9261	661 bp upstream
Tssr9262	transcription start site region 9262	669 bp upstream
Tssr9263	transcription start site region 9263	691 bp upstream
Tssr9264	transcription start site region 9264	736 bp upstream
Tssr9265	transcription start site region 9265	767 bp upstream
Tssr9266	transcription start site region 9266	856 bp upstream
Tssr9267	transcription start site region 9267	1147 bp upstream
Tssr9268	transcription start site region 9268	1203 bp upstream
Tssr9269	transcription start site region 9269	1586 bp upstream
Tssr9270	transcription start site region 9270	1626 bp upstream
Tssr9271	transcription start site region 9271	1650 bp upstream
Tssr9272	transcription start site region 9272	1680 bp upstream
Tssr9273	transcription start site region 9273	1732 bp upstream
Tssr9274	transcription start site region 9274	1750 bp upstream
Tssr9275	transcription start site region 9275	1777 bp upstream
Tssr9276	transcription start site region 9276	1792 bp upstream
Tssr9277	transcription start site region 9277	1842 bp upstream
Tssr9278	transcription start site region 9278	1863 bp upstream
Tssr9279	transcription start site region 9279	1884 bp upstream
Tssr9280	transcription start site region 9280	1901 bp upstream