rs220856913 SNP Detail

Summary

• ID
  rs220856913
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr17:28397670 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCCTCAAT TGGACTCTAT
  CAGTTTGTAA AGCCGTGCAG CACAGAGCTT CCCACTGAGT TGACATCATG AGCTTGGCCC
  TTCAGCTGGG GAACTTTTGG CAAAGCATTT AAAGCCTGAG GTAACAGGTG CAGAACATTC
  AGGACCCTTC TGCCTCACAG GAAACCTTTA CCTTTATGGT AGAACAGTTG TTTTTAGTGA
  M
  GGTCTAACTA CTGGGTGCTG GAGATGCCAC AGACACCAAG CATATGGCCC ACGCCAGTCA
  CTACTGCTGC CATCTTGGAA TCCCTGTCCC CATCTCTGAT GAGTGCCTTA CCTCTCACTT
  GGACCTTTTT CACAGCCCCT TAGTAATGAT CCCCCTGCCC CAGAAACTAC TGTATGGCAA
  ACTTTATTTA TATAGATTAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325352123	CHEV_17_28315641	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220856913					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:28397670 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
C230013L11Rik	RIKEN cDNA C230013L11 gene			1014 bp upstream
Rr524454	regulatory region 524454			1228 bp distal
Rr524455	regulatory region 524455			1501 bp distal
Rr524456	regulatory region 524456			1025 bp distal
Rr524457	regulatory region 524457			568 bp distal
Rr524458	regulatory region 524458			1672 bp proximal
Tssr143392	transcription start site region 143392			1482 bp downstream
Tssr143393	transcription start site region 143393			1247 bp downstream
Tssr147097	transcription start site region 147097			1014 bp upstream
Zfp523	zinc finger protein 523			Intron
				Noncoding-Transcript-Variant