rs220857088 SNP Detail

Summary

• ID
  rs220857088
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:32418870 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATTATTAC ATTTTATGTT
  CATAATGTTC AAAGAAAGAA TAGAGACCTC AAAAATACTG TTAGATTTAA TAATCAACAT
  AAGGTTAAAA AAAAAAGCCC TCCCCCAAAA GTCTATAGGT GACAATCACA ACAGGTATTA
  CATTTGGGTA AAAATAAATA AATAAATAAC TCTAAAAATA AATAAAACCA AAGCTAAGCT
  Y
  CAGTGAATAC ACAAGCTGAA ATACAGACTC AAAAACATGC TCGGATCCGT TCAAACTGCT
  GCATTAATTT AAGAGACTAA TTTAGAAGCT GTTATAAAAA TACTTCTCAG ATCTCAAAAT
  CCATCCGATT GGACGTGTGC GATGGCAGAC ACGAAGGATG CACAGCGCTT GATGTCCTAA
  TTTGGAAGGG AGCTCAGAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320697910	CHEV_3_32263643	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220857088					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32418870 () rs orientation: forward

Symbol	Name	Function Class
4930429B21Rik	RIKEN cDNA 4930429B21 gene	768 bp upstream
Cpgi13055	CpG island 13055	223 bp proximal
Rr374783	regulatory region 374783	within coordinates
Rr574945	regulatory region 574945	223 bp distal
Rr574946	regulatory region 574946	within coordinates
Rr574947	regulatory region 574947	747 bp proximal
Rr574948	regulatory region 574948	947 bp proximal
Rr574949	regulatory region 574949	948 bp proximal
Tssr28742	transcription start site region 28742	317 bp downstream
Tssr28743	transcription start site region 28743	190 bp upstream
Tssr28744	transcription start site region 28744	585 bp upstream
Tssr28745	transcription start site region 28745	615 bp upstream
Tssr32923	transcription start site region 32923	423 bp downstream
Tssr32924	transcription start site region 32924	462 bp downstream
Tssr32925	transcription start site region 32925	702 bp downstream
Tssr32926	transcription start site region 32926	887 bp downstream
Tssr32927	transcription start site region 32927	922 bp downstream
Tssr32928	transcription start site region 32928	1171 bp downstream
Zmat3	zinc finger matrin type 3	Intron