rs220857372 SNP Detail

Summary

• ID
  rs220857372
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:79211738 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATCTGGCAC AGTGAGAAAA
  CAGACAAGAA CAGAGCATGG CCTCCAAGCT CCAGAACCAC GTGAAGGCAG AGACCAGAAC
  AAAACACTGC ACTAGTCTAA GGGTGGAGCT TCAACGAGGC CAAACCAAAC CTGCCCAATC
  CTGTCGGGCT GGCAAGAGGG CAGGTGGGGG AACTTTAGAG GAAGGATTGG TATTTGTTTG
  S
  GATCATGTGA ACTGCCCATT AAAAATACAG GCAGAGATCC ATAAACCCTT GTGCCCTCCC
  AGTCGCACTC ACACCCAAAT CCCTAGTCAC AGTCACCTGG GTCACAGGCT CCTAGTCGCC
  AGCTTCCAGG TCATCGGAGG GAGCTGGAGG TGAACCCAGG ATTGGAGGCT AGAGAACTGG
  GAAAAACACA CGGGGGAGCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394675138	MGP_WTSI_15_79157968	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220857372					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394675138	MGP_WTSI_15_79157968	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:79211738 () rs orientation: forward

Symbol	Name	Function Class
2310026G15Rik	RIKEN cDNA 2310026G15 gene	89 bp upstream
Cpgi7329	CpG island 7329	261 bp proximal
Pla2g6	phospholipase A2, group VI	within coordinates
Rr404497	regulatory region 404497	683 bp upstream
Rr505593	regulatory region 505593	within coordinates
Rr505594	regulatory region 505594	182 bp proximal
Rr505595	regulatory region 505595	416 bp proximal
Rr505596	regulatory region 505596	1905 bp proximal
Tssr132082	transcription start site region 132082	45 bp upstream
Tssr135328	transcription start site region 135328	588 bp downstream
Tssr135329	transcription start site region 135329	616 bp downstream
Tssr135330	transcription start site region 135330	663 bp downstream