rs220859038 SNP Detail

Summary

• ID
  rs220859038
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25103885 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAGC CCAGAGAAAA TGCCCTGGCT
  M
  GAGCACCTTG ACAGCACATC CAGGA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325334742	CHEV_17_25021856	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220859038					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25103885 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8747	CpG island 8747	894 bp proximal
Nubp2	nucleotide binding protein 2	within coordinates
Rr339336	regulatory region 339336	115 bp proximal
Rr405096	regulatory region 405096	1356 bp upstream
Spsb3	splA/ryanodine receptor domain and SOCS box containing 3	1732 bp upstream
Tssr143106	transcription start site region 143106	1051 bp upstream
Tssr143107	transcription start site region 143107	1064 bp upstream
Tssr143108	transcription start site region 143108	1091 bp upstream
Tssr143109	transcription start site region 143109	1109 bp upstream
Tssr143110	transcription start site region 143110	1778 bp upstream
Tssr143111	transcription start site region 143111	1967 bp upstream
Tssr146788	transcription start site region 146788	948 bp downstream
Tssr146789	transcription start site region 146789	961 bp downstream
Tssr146790	transcription start site region 146790	989 bp downstream
Tssr146791	transcription start site region 146791	1025 bp downstream
Tssr146792	transcription start site region 146792	1393 bp downstream
Tssr146793	transcription start site region 146793	1472 bp downstream