rs220862795 SNP Detail

Summary

• ID
  rs220862795
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:90997584 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GCTGGGAGG CACGGGAGGG AGGGGCTTGG
  AGATGCCTGC TGTGGCCTTA TCTCCCATCT CTGTAGAGTC AGCAGCTTCC TAGGAGTCAC
  ATTAAACAAA GAGTGGTCAC CCGATGTCCA GTGGAGACTT ACCCATAGTT TCAGTTCAGT
  S
  GAGCAGACCA AACCTGTCAG ATTCCTAGCC TATGAAATAT ATGGGAAAAG CTACTGTACT
  CTTGATTGCT GGACTTACAG ACTATATAAG TAGTTAATAG TGACACCTTA ACGGAAGTCC
  AATGACCTTC TTCCAGGTCA TATCAGAGGC                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320391911	CHEV_2_91007396	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220862795					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:90997584 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Madd	MAP-kinase activating death domain			Intron
				Noncoding-Transcript-Variant
Rr560659	regulatory region 560659			1888 bp distal
Tssr25159	transcription start site region 25159			1385 bp downstream