rs220863712 SNP Detail

Summary

• ID
  rs220863712
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:170785866 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTCCCAAG TCTATTTAAG
  TTCAAATCTT TTCCAATGCA TGTAAGAATT TTAGATAAAT TTGCTAAGGT TTCAAGGAAA
  GATAGGTTTT CACTGACCTC TTGAGATTCA GAAAGTCCTT TTCAGGTTGC TATGACAATC
  CCTCAGGGAC TTGGATGATT CTTTATTAAT TATTAATATA ATTCTTTATA TTCTGGAGGC
  T
  GGGACCAGAA TCTGGTAAAG GCTTTCTTGC CCTGTCATTT CATGGGTTAA GAAGGGGGAA
  ATGGAGCAGG AAGGAGAAAC AGAGCCAAAA GATAGCAAAC TCGCCCTTTT AGAAGGAAGC
  CACTCCCACA AAACTAGCTC TCTGCTGTGG GCTAGTCACC TCCCATCAGA CCCCACCTCC
  CTTGCATTGG GGACTGTTTC                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	MA/MyJ	MOLF/EiJ
ss352376592	MGP_WTSI_1_172888428	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	MA/MyJ	MOLF/EiJ
rs220863712					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352376592	MGP_WTSI_1_172888428	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:170785866 () rs orientation: forward

Symbol	Name	Function Class
Fcgr2b	Fc receptor, IgG, low affinity IIb	320 bp downstream
Gm70986	predicted gene, 70986	within coordinates
Rr20517	regulatory region 20517	535 bp proximal
Rr20518	regulatory region 20518	1135 bp proximal
Rr20519	regulatory region 20519	1534 bp proximal
Tssr284	transcription start site region 284	1597 bp downstream
Tssr14949	transcription start site region 14949	598 bp downstream
Tssr14950	transcription start site region 14950	1442 bp downstream
Tssr14951	transcription start site region 14951	1520 bp downstream
Tssr14952	transcription start site region 14952	1777 bp downstream
Tssr14953	transcription start site region 14953	1792 bp downstream