rs220865239 SNP Detail

Summary

• ID
  rs220865239
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:96513655 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGACTGTCCT CGTCTCCCGT
  CTCCGGGTCT GCGCTGCCCG AGACGGCCGG CGCCTCGGGA GAAGCCGCCG CAGCAGGCGC
  TGCCGCCGCC ATGGTGCCGC CCGGCCCCTA CCCCAGCCCT ACCGCCTGCG TAGCCGGGCA
  AGGCGGAGCC GGAGCGAGGC CTAGGCCGGA TCGAGCCTCG CTGTAGCCCC GCCTCGGCCT
  S
  GGGCTGACTC GCCCCGCCCC TCGCGCCGTG CCCGCCCTGC ATCCGCCTCG CCTTGCCTCC
  CTGGGCAAGT CGCGAGAGGC GCTCTGAAAC CCCCACAAGG AGGAAAACCC TGGCCCTGCT
  GTGATCCCCA GAACCCTGAG AATTGGACGT CCCCCACGAA CGGACCTCTA GGTCCCCAGA
  TGCTCAAGGA AAAGAAAAGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323111049	CHEV_9_96532021	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220865239					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:96513655 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22167	CpG island 22167	within coordinates
Rasa2	RAS p21 protein activator 2	within coordinates
Tssr86611	transcription start site region 86611	572 bp downstream
Tssr90973	transcription start site region 90973	957 bp upstream
Tssr90974	transcription start site region 90974	702 bp upstream
Tssr90975	transcription start site region 90975	406 bp upstream
Tssr90976	transcription start site region 90976	48 bp upstream