rs220873798 SNP Detail

Summary

• ID
  rs220873798
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113618347 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGACAGCCT GCCTCTTCTC
  TCTTAAAATA TATCCTAGGT ATTTTGCCTT GATAATTTTT TTTTAATCCC AGCTTTCTAT
  TGTATAGCTC AAACTGGTGA TCCTCCTGCC TCAGCTTCTC CAAAGCTATG ATTATACATA
  CCTGGCATTG AGCTCTTATC TCTTGAATGT ATTTTCACTC TTTATCACTA CCAGGGAGCT
  T
  GAGGGCTGGG ACGGGAACAT CCGAGATGAA GGGAGGTGAC TCTCCTTTGT GCCCTCAGCC
  TTCCTATCCC CTCCTTGCAG GCTCTGTCCT AGTCTCAGGG TGCCCATGAA GATGTCTATT
  ACCACTGGAT TGCCCAGGGA ACTCTGGCTG AAGTGTGGCT CAGTGGTAGA GTGTGTGCTT
  ACTGTGCCTA TGGGCCTGGG                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321911275	CHEV_6_113591380	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220873798					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113618347 () rs orientation: forward

Symbol	Name	Function Class
Gm43964	predicted gene, 43964	within coordinates
Irak2	interleukin-1 receptor-associated kinase 2	within coordinates
Rr636559	regulatory region 636559	1853 bp distal