rs220874006 SNP Detail

Summary

• ID
  rs220874006
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156264816 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCTG CTTTTCTGGC AGAGGCCGCC
  R
  AGGCAGGGGA AGCTGGGATT CTTAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320579309	CHEV_2_156248632	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220874006					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156264816 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12548	CpG island 12548	914 bp distal
Epb41l1	erythrocyte membrane protein band 4.1 like 1	within coordinates
Rr55936	regulatory region 55936	within coordinates
Tssr21158	transcription start site region 21158	1853 bp downstream
Tssr21159	transcription start site region 21159	1831 bp downstream
Tssr21160	transcription start site region 21160	1820 bp downstream
Tssr21161	transcription start site region 21161	1782 bp downstream
Tssr21162	transcription start site region 21162	1773 bp downstream
Tssr21163	transcription start site region 21163	1753 bp downstream
Tssr21164	transcription start site region 21164	1722 bp downstream