rs220877400 SNP Detail

Summary

• ID
  rs220877400
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:77544687 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTTTAGCT GAATTAATAA
  TACAAAACTC AAATGAACCC TCTGACTCCC CAAAATATAA CTTCTCGACA AAATTGAGCC
  CCTACCCCCG CAAATACCCT ACATTTGTTA GTTGACAGAA AATAAATATA GATTTTTGTA
  CTAAATGTGC ACATATGGTT ATCTTGATTT ATGTTTCACA TTTAAAAAAA AATCATTTTG
  R
  TGACAAAGCG ACAAAGTGGA ATCCCTGTTT CGGCGGACTT AACTAAAAAT GGGCAGCTTG
  GGTCGTGTCT GTTTCTATTC CGGGAGGCAG AGCTGACGGG CCCCAACAGA TGCAGCCCTT
  GGAATGCATC AGGGACAGGG AGCGGGCACA GCTGATTCTC ACCCTTAGCC AGTAGTCCTG
  TGGGATCCCA GTCCTGGGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378138883	MGP_WTSI_9_77485212	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220877400					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378138883	MGP_WTSI_9_77485212	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:77544687 () rs orientation: forward

Symbol	Name	Function Class
Gm68532	predicted gene, 68532	578 bp upstream
Klhl31	kelch-like 31	within coordinates
Rr683389	regulatory region 683389	895 bp distal
Rr683390	regulatory region 683390	589 bp distal
Rr683391	regulatory region 683391	402 bp distal
Rr683392	regulatory region 683392	9 bp proximal
Tssr86194	transcription start site region 86194	925 bp downstream
Tssr86195	transcription start site region 86195	877 bp downstream
Tssr86196	transcription start site region 86196	858 bp downstream
Tssr86197	transcription start site region 86197	795 bp downstream
Tssr86198	transcription start site region 86198	785 bp downstream
Tssr86199	transcription start site region 86199	770 bp downstream
Tssr86200	transcription start site region 86200	694 bp downstream
Tssr86201	transcription start site region 86201	673 bp downstream