rs220885962 SNP Detail

Summary

• ID
  rs220885962
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:135643997 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAAATTCC TAAAGATGAA
  TAAGATCAAG TTCTGTGAAG TAACAGTACT AGGCAAGGAA TTATATATCC GAAAATTCTG
  GTTAATTTCC TTAAGCAAAA AAAAAAAAAA AAAAAAAAGT CACCTGTTCT GGCACATCTT
  TTGTTTTTTC TCAGGATTGA TAAATGGGCC TAAATTCTGA TGCTAAAACC CTTCGTGAGC
  W
  GTGGCGCAGC CGCAGTATCA GCGCTTGGGA GGAAGAAGGG CCGCAAATTA AAGGCCAGCT
  TAGATTACAT ATTGAGGCCC CGTCACTACA TAAATAAACC AATGAAAGAA TATTCTTTTT
  GCTCACTTTT TTCCCCTCTT GAAATTTTTA TCAGGTACGT GTGTTGGCCC CTCAGGTTTA
  TGTAGTGGTT CTGTGCTGTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss404681733	MGP_WTSI_X_133277787	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220885962					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss404681733	MGP_WTSI_X_133277787	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:135643997 () rs orientation: forward

Symbol	Name	Function Class
BC065397	cDNA sequence BC065397	within coordinates
Cpgi22954	CpG island 22954	1003 bp distal
Morf4l2	mortality factor 4 like 2	within coordinates
Rr406170	regulatory region 406170	1725 bp downstream
Rr406171	regulatory region 406171	1509 bp upstream
Tssr162050	transcription start site region 162050	1384 bp downstream
Tssr164190	transcription start site region 164190	1941 bp upstream
Tssr164191	transcription start site region 164191	1799 bp upstream
Tssr164192	transcription start site region 164192	1172 bp upstream
Tssr164193	transcription start site region 164193	103 bp upstream
Tssr164194	transcription start site region 164194	427 bp downstream