rs220888383 SNP Detail

Summary

• ID
  rs220888383
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:76133668 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             TGACAATGCC ATCTGTGCTT CCCTCTCTCT GGTCCCCAGG CCTGGCCTGG
  Y
  GCAGAGGGAG TCCCTCTCGC CCTCTTGTAT GTACACTGCA AATACTTAAC           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394611520	MGP_WTSI_15_76079898	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	C	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220888383					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	C	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394611520	MGP_WTSI_15_76079898	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:76133668 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7222	CpG island 7222	1758 bp distal
Grina	glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding)	within coordinates
Mir6953	microRNA 6953	1210 bp downstream
Rr504689	regulatory region 504689	1753 bp distal
Rr504690	regulatory region 504690	519 bp proximal
Tssr131725	transcription start site region 131725	1927 bp downstream
Tssr131726	transcription start site region 131726	1859 bp downstream
Tssr131727	transcription start site region 131727	1792 bp downstream
Tssr131728	transcription start site region 131728	1773 bp downstream
Tssr131729	transcription start site region 131729	1632 bp downstream
Tssr131730	transcription start site region 131730	1612 bp downstream
Tssr131731	transcription start site region 131731	1545 bp downstream
Tssr131732	transcription start site region 131732	1515 bp downstream
Tssr131733	transcription start site region 131733	1479 bp downstream
Tssr131734	transcription start site region 131734	1450 bp downstream
Tssr131735	transcription start site region 131735	1396 bp downstream
Tssr131736	transcription start site region 131736	1326 bp downstream
Tssr131737	transcription start site region 131737	1170 bp downstream
Tssr131738	transcription start site region 131738	996 bp downstream
Tssr131739	transcription start site region 131739	970 bp downstream
Tssr131740	transcription start site region 131740	905 bp downstream
Tssr131741	transcription start site region 131741	844 bp downstream
Tssr131742	transcription start site region 131742	656 bp downstream
Tssr131743	transcription start site region 131743	626 bp downstream
Tssr131744	transcription start site region 131744	607 bp downstream
Tssr131745	transcription start site region 131745	480 bp downstream
Tssr131746	transcription start site region 131746	426 bp downstream
Tssr131747	transcription start site region 131747	378 bp downstream
Tssr131748	transcription start site region 131748	202 bp downstream
Tssr131749	transcription start site region 131749	126 bp downstream
Tssr131750	transcription start site region 131750	6 bp upstream
Tssr131751	transcription start site region 131751	78 bp upstream
Tssr134960	transcription start site region 134960	1807 bp upstream
Tssr134961	transcription start site region 134961	1420 bp upstream
Tssr134962	transcription start site region 134962	1295 bp upstream
Tssr134963	transcription start site region 134963	118 bp upstream
Tssr134964	transcription start site region 134964	87 bp upstream
Tssr134965	transcription start site region 134965	62 bp upstream
Tssr134966	transcription start site region 134966	37 bp downstream
Tssr134967	transcription start site region 134967	433 bp downstream