rs220889938 SNP Detail

Summary

• ID
  rs220889938
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:36568950 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGAG AGAGAGAGCA CATACACACA
  Y
  GGAGAAAAGA TAGAGCGGGG TTTCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323643777	CHEV_11_36491625	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220889938					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:36568950 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2736	CpG island 2736	543 bp distal
Rr246545	regulatory region 246545	within coordinates
Tenm2	teneurin transmembrane protein 2	within coordinates
Tssr107449	transcription start site region 107449	582 bp upstream
Tssr107450	transcription start site region 107450	433 bp upstream
Tssr107451	transcription start site region 107451	381 bp upstream
Tssr107452	transcription start site region 107452	337 bp upstream
Tssr107453	transcription start site region 107453	286 bp upstream
Tssr107454	transcription start site region 107454	229 bp upstream
Tssr107455	transcription start site region 107455	184 bp upstream
Tssr107456	transcription start site region 107456	157 bp upstream
Tssr107457	transcription start site region 107457	411 bp downstream