rs220894391 SNP Detail

Summary

• ID
  rs220894391
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156133390 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTGGTAGA GTGCACATCT
  GCAGACTTGA AGGTCAAAGA AGCTCCAAGC CCCAAACAAA GGTCCTATCG GTTTATGGCT
  ACCCAAGTGC TCAGCCCAGG TCCTACTAAC ACAACCTGTC TATAGCTACC ATCAACTCCT
  CTTCTCCCAG CACCCCTGCC CCAGATGTTG TCCCTTTTCC CTATTTGCCG TCTTTGGAAC
  R
  TTTTAGGGCA TTTTAAATTA ATTCCTAGAC AAAAGTTTGT GCCTCCCATC ACATCAAGTG
  AATAAACCCA GTGTGTTGGG TGAATGATGA GACGGTACAG AGAACTCTGT GACTGGGAAG
  GGTAAGACAA GGCCTTTGGA TAGGAGCAGG TCAGCCTTAA GGAGGAAGAC AGGTCTGTGG
  ATTGACTGAC TGACAGCAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321444904	CHEV_4_155423042	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs220894391					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156133390 () rs orientation: forward

Symbol	Name	Function Class
Rr93557	regulatory region 93557	1411 bp proximal
Rr106662	regulatory region 106662	799 bp proximal
Tssr44999	transcription start site region 44999	961 bp upstream
Tssr45000	transcription start site region 45000	1532 bp downstream
Tssr45001	transcription start site region 45001	1565 bp downstream
Tssr45002	transcription start site region 45002	1800 bp downstream
Tssr45003	transcription start site region 45003	1829 bp downstream
Tssr45004	transcription start site region 45004	1852 bp downstream
Ttll10	tubulin tyrosine ligase-like family, member 10	within coordinates