rs220897347 SNP Detail

Summary

• ID
  rs220897347
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:91737606 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACCTTCTA ATGCCTGGGT
  TCCTCCTCTG TAATGTATAT GGAGTCCTCC CCTGCAGCTA GGGGGATCCC ATCAGTTCTT
  ACAAAGTGCT CAAAGCCGTG CTTGGCATAT AGGCTGTGTG GATGGTGCTG GCCCTCACTC
  CTCTGCACTG ACACCCAGAG GGAACAGCTT CTATCTGCCT TTAGATCTGC AAATTTCCTC
  Y
  ATTCCACAGG CCTGGCCCTG TTTCTCTGGA CCCCAGAACC CGTGAACCTA CTTTGCCCTG
  GGTCTTTGCA ACTTAGGAGC AACAGCCACC TCCAGGTAGA CTTCCAGGCT ACCCACTTGG
  CACTTCCCAT CATCAAGGCC AAAGATCTCC TGGCTGCACA AACTAAGACA CACCCCACTC
  CACAGCCTAG TTTCCAGTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369190359	MGP_WTSI_6_91710619	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220897347					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369190359	MGP_WTSI_6_91710619	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:91737606 () rs orientation: forward

Symbol	Name	Function Class
Grip2	glutamate receptor interacting protein 2	884 bp downstream
Rr137562	regulatory region 137562	1795 bp proximal
Rr145245	regulatory region 145245	1753 bp proximal
Rr379752	regulatory region 379752	1440 bp downstream
Slc6a6	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	1562 bp downstream
Tssr57767	transcription start site region 57767	1987 bp downstream
Tssr57768	transcription start site region 57768	1977 bp downstream
Tssr57769	transcription start site region 57769	1777 bp downstream
Tssr57770	transcription start site region 57770	1666 bp downstream
Tssr62096	transcription start site region 62096	1991 bp upstream
Tssr62097	transcription start site region 62097	1784 bp upstream