rs220898208 SNP Detail

Summary

• ID
  rs220898208
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:110806696 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGACACAGT GACACAAGAC
  TGAAGGGTGA ATGAGATGAC TTATTTTTTA AATGTTATGT CATTTATGGT ACATAGAAAT
  TACTGCACTG CAATTAAAAT GTAGTGTCAA TTTGATATTG TAACTACAGA GAACACAATC
  TAATCACGGT AAGAGACTAC ACTTCTGGCT ACACTATCAC AGGCAATCAT AACCGTATAT
  M
  TATGAAAATC AAACAGCGGT CCCAACAAAA CCGACTTGTC TAGTCGCATT TGGACTCCAG
  GTTACCCACA AACCCGGCAC TAAGTCCAGT TTTCCAGTCC TTCTATTTTC TAGAAAGACT
  GCCTCATCTC CCAACTTCTA AGCAACCGTT TTACATTCCG CTAAAAGGAT GCTTTCAGAA
  CCACAACTGT TTAACTCAGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387344438	MGP_WTSI_12_112078472	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220898208					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387344438	MGP_WTSI_12_112078472	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:110806696 () rs orientation: forward

Symbol	Name	Function Class
4921507G05Rik	RIKEN cDNA 4921507G05 gene	767 bp upstream
Cpgi5123	CpG island 5123	128 bp proximal
Mok	MOK protein kinase	within coordinates
Rr387788	regulatory region 387788	1957 bp downstream
Rr403503	regulatory region 403503	572 bp upstream
Rr473006	regulatory region 473006	1760 bp distal
Rr473007	regulatory region 473007	30 bp proximal
Rr473008	regulatory region 473008	655 bp proximal
Rr473009	regulatory region 473009	785 bp proximal
Rr473010	regulatory region 473010	1601 bp proximal
Rr473011	regulatory region 473011	1891 bp proximal
Tssr115236	transcription start site region 115236	759 bp upstream
Tssr117795	transcription start site region 117795	1166 bp upstream
Tssr117796	transcription start site region 117796	588 bp downstream
Tssr117797	transcription start site region 117797	643 bp downstream