rs220902562 SNP Detail

Summary

• ID
  rs220902562
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54599155 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATCTGTTG TACTCTCACG
  ACTTCTGTTT CAGATCTAGG CTGTTTTGAT TTCTGACACA AGACCAATGC TCACCTAGAG
  TCAGTGACAA AGTCCAGTGG AGACAGAATT GTCTTCATGA ATGGCTTTTT TGTTGGTTTG
  TTTGAGGCAG TGTCTTGCTC TGTAAGTCCA GCCTGTAAGT CACTGTGTAA CATACAAACC
  K
  TAGATTTGTG TCTCTCCTGA ATGCTGGGAT TACAGGCATG AACCACCATG ACAGCCAAGG
  GCTGGCTTTG AATAAAACTC TTCTACGAAT TCTGCTGAGA CAAACATTTG ACTCCAGTAG
  TGCTAAGACT CAAATACTTG TACAGGAGTG TTTCCAGCAG TTCTAACACA ACAGTATGAA
  GGCAGAAAAT GGCCCATCAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358013631	MGP_WTSI_3_54495656	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220902562					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358013631	MGP_WTSI_3_54495656	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54599155 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13172	CpG island 13172	615 bp proximal
Gm65558	predicted gene, 65558	within coordinates
Rr397672	regulatory region 397672	828 bp upstream
Rr576829	regulatory region 576829	295 bp proximal
Rr576830	regulatory region 576830	889 bp proximal
Rr576831	regulatory region 576831	1382 bp proximal
Supt20	SPT20 SAGA complex component	1073 bp upstream
Tssr29131	transcription start site region 29131	1041 bp upstream
Tssr29132	transcription start site region 29132	1071 bp upstream
Tssr29133	transcription start site region 29133	1115 bp upstream
Tssr29134	transcription start site region 29134	1149 bp upstream
Tssr29135	transcription start site region 29135	1300 bp upstream
Tssr29136	transcription start site region 29136	1325 bp upstream
Tssr29137	transcription start site region 29137	1354 bp upstream