rs220902894 SNP Detail

Summary

• ID
  rs220902894
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:102838119 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAAAGGACC ACCACCTGCA
  GGAGGTCGAA GGATGCAACA TTGCCCCCTG TCTGCAGGGG ACAAAGAGAT GTTGCAGGGG
  GTGGAGGGTT ACAGAGTGAG GAACAAGAGA GTAGAACAAG AAAGAGGATG AGGGCTAAAG
  CCTGGAAGGA ATACTGGGGA GGGGCGTTCC ATAGGCACCC AGGCCTAGCA TCCAGATAAC
  Y
  CGTCTGGATC CTTTGCTTTT AGGGTGCCCA GAGGGAATCT CTGAATTCTA ATAGCAGCCT
  GACTTTTTAT CTGATTCTAA CTACTTCAGG GGCATTCTCT CCCAGGTGGC AGCGTCTTCA
  GCCCCTTCTT TTCCACTGCC CCAGGGGATA TCTTCTAGGC TGCCTCTACC TGTGGCCTCT
  TCCATGAGGC CTTTTCTGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384513092	MGP_WTSI_11_102808607	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs220902894					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384513092	MGP_WTSI_11_102808607	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:102838119 () rs orientation: forward

Symbol	Name	Function Class
C1ql1	complement component 1, q subcomponent-like 1	605 bp upstream
Cpgi3944	CpG island 3944	99 bp distal
Cpgi3945	CpG island 3945	1003 bp proximal
Rr457458	regulatory region 457458	115 bp distal
Rr457459	regulatory region 457459	142 bp distal
Rr457460	regulatory region 457460	504 bp proximal
Tssr111125	transcription start site region 111125	1237 bp upstream
Tssr111126	transcription start site region 111126	725 bp upstream
Tssr111127	transcription start site region 111127	568 bp upstream
Tssr111128	transcription start site region 111128	542 bp upstream
Tssr111129	transcription start site region 111129	515 bp upstream